Develops statistical and computational methods for low-coverage whole-genome sequencing and SNP-array data. Applies them to biobanks to study disease genetics.
21 papers since 2024
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Parent-of-origin effects on complex traits in up to 236,781 individuals
Nature, 2025
A Genomics England haplotype reference panel and imputation of UK Biobank
Nature Genetics, 2024
A blended genome and exome sequencing method captures genetic variation in an unbiased, high-quality, and cost-effective manner
Uses human iPSC-derived neuronal models, functional genomics and Finnish genetic and clinical datasets. Studies schizophrenia and neurodevelopmental disorders, with close links to the Stanley Center.
19 papers since 2024
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Single-nucleus sequencing reveals enriched expression of genetic risk factors in extratelencephalic neurons sensitive to degeneration in ALS
Nature Aging, 2024
X-chromosome inactivation in human iPSCs provides insight into X-regulated gene expression in autosomes
Genome biology, 2024
Antipsychotic medications and sleep problems in patients with schizophrenia
human iPSC-derived neuronal models, human iPS cell lines and differentiated neuronal cultures, microfluidic cell cultures, MEA recording, high-content imaging, FinnGen clinical register data, transcriptomic data from human iPSC-derived neuronal models, plasma proteomic data from patient samples
Techniques
functional genomics, gene editing, molecular cell biology, microfluidic cell cultures, co-cultures, 2D and 3D models, rodent neuronal and glial cell cultures, MEA recording
Collaborators: Karolinska Institutet, Aalto University +3 more
NeurogeneticsRNA-seqSpatial transcriptomics
Data Science - Genetic Epidemiology Lab (DSGE Lab)dsgelab.org/team
Dry lab~17 people
Develops statistical and deep-learning models for EHR/registry, genetic, proteomic and single-cell transcriptomic data. Uses FinnGen and GenCOST for disease prediction, prevention and healthcare-cost genetics.
64 papers since 2024
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Genetic drivers and cellular selection of female mosaic X chromosome loss
Nature, 2024
Family-GWAS reveals effects of environment and mating on genetic associations
medRxiv, 2024
Evaluation of polygenic scoring methods in five biobanks shows larger variation between biobanks than methods and finds benefits of ensemble learning
Uses human induced pluripotent stem cell (iPSC)-derived neuronal models and high-throughput profiling of single cells. Studies genetic variation in disease-relevant cell types.
4 papers since 2024
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INTS6 loss of function disrupts transcriptional regulation in mild intellectual disability
bioRxiv (Cold Spring Harbor Laboratory), 2026
Joint profiling of cell morphology and gene expression during in vitro neurodevelopment
eLife, 2025
Author Correction: Genomic basis for RNA alterations in cancer
Carolina Digital Repository (University of North Carolina at Chapel Hill), 2025
Studies lymphoma using liquid biopsies, circulating tumour DNA, multiplex imaging and molecular profiling. Develops biomarkers and clinical trials for precision lymphoma treatment.
181 papers since 2024
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Epcoritamab monotherapy in patients with relapsed or refractory follicular lymphoma (EPCORE NHL-1): a phase 2 cohort of a single-arm, multicentre study
The Lancet Haematology, 2024
Ibrutinib combined with immunochemotherapy with or without autologous stem-cell transplantation versus immunochemotherapy and autologous stem-cell transplantation in previously untreated patients with mantle cell lymphoma (TRIANGLE): a three-arm, randomised, open-label, phase 3 superiority trial of the European Mantle Cell Lymphoma Network
The Lancet, 2024
Gut microbiome-derived bacterial extracellular vesicles in patients with solid tumours
Studies DNA methylation, histone modifications and microRNA in Finnish Twin Cohort twins. Uses these data for obesity, aging, substance use and risk prediction.
44 papers since 2024
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Metabolic syndrome and epigenetic aging: a twin study
International Journal of Obesity, 2024
Suboptimal dietary patterns are associated with accelerated biological aging in young adulthood: A study with twins
Clinical Nutrition, 2024
Exploring machine learning strategies for predicting cardiovascular disease risk factors from multi-omic data
Uses genome information, digital health care data, GWAS, sequencing and DNA microarray genotyping. Studies migraine, schizophrenia, epilepsy and cardiovascular traits in Finnish cohorts and FinnGen.
118 papers since 2024
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Proteomic aging clock predicts mortality and risk of common age-related diseases in diverse populations
Nature Medicine, 2024
Author Correction: A genomic mutational constraint map using variation in 76,156 human genomes
Nature, 2024
Distinct and shared genetic architectures of gestational diabetes mellitus and type 2 diabetes