Studies gene-regulatory evolution using bulk and single-cell RNA sequencing, ATAC-seq and comparative iPSC panels. Connects genetic variation to phenotypes in humans and primates.
10 papers since 2024
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Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids
Genome Research, 2025
Genetic regulatory effects in response to a high-cholesterol, high-fat diet in baboons
Cell Genomics, 2024
Cell type and dynamic state govern genetic regulation of gene expression in heterogeneous differentiating cultures
Combines statistical methods with RNA-seq, ChIP-seq, ATAC-seq, CUT&TAG, scRNAseq and scATACseq data. Studies trans gene regulation and disease biology.
17 papers since 2024
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Trans-eQTL mapping in gene sets identifies network effects of genetic variants
Cell Genomics, 2024
Allele frequency impacts the cross-ancestry portability of gene expression prediction in lymphoblastoid cell lines
The American Journal of Human Genetics, 2024
Impact of disease-associated chromatin accessibility QTLs across immune cell types and contexts
Studies DNA methylation, sequencing and array measurements in GTEx tissues and arsenic-exposed Bangladeshi cohorts. Targets cancer susceptibility, arsenic toxicity, aging and prostate cancer disparities.
113 papers since 2024
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Genome-wide association study of prostate-specific antigen levels in 392,522 men identifies new loci and improves prediction across ancestry groups
Nature Genetics, 2025
DNA methylation correlates of chronological age in diverse human tissue types
Epigenetics & Chromatin, 2024
The association of cigarette smoking with DNA methylation and gene expression in human tissue samples
Studies asthma genetics using whole-genome/exome sequencing, SNP genotypes, DNA methylation, transcriptomic profiling and cell culture. Uses Hutterite, Amish and birth-cohort data to study disease risk.
58 papers since 2024
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Neighborhood Food Access in Early Life and Trajectories of Child Body Mass Index and Obesity
Archives of Pediatrics and Adolescent Medicine, 2024
Analytical challenges in omics research on asthma and allergy: A National Institute of Allergy and Infectious Diseases workshop
Journal of Allergy and Clinical Immunology, 2024
Rhinovirus infection of airway epithelial cells uncovers the non-ciliated subset as a likely driver of genetic risk to childhood-onset asthma
Combines RNA-seq and single-cell technologies with PBMC biobank, immunological assays and population genetics. Studies immune variation, infection responses and disease susceptibility across populations and primates.
34 papers since 2024
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β-Glucan reprograms neutrophils to promote disease tolerance against influenza A virus
Nature Immunology, 2025
Microbial transmission in the social microbiome and host health and disease
Cell, 2024
BCG vaccination alters the epigenetic landscape of progenitor cells in human bone marrow to influence innate immune responses
Evaluates pharmacogenomic markers and genetic data in clinical trials. Supports personalized chemotherapy, medication decisions and patient care.
Funded by National Institutes of Health (NIH), University of Chicago Biological Sciences Division +1 more
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National Institutes of Health (NIH), Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program · active
“The Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program is sponsored by the National Institutes of Health (NIH)”
University of Chicago Biological Sciences Division, Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program · active
“The Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program is sponsored by the National Institutes of Health (NIH), University of Chicago Biological Sciences Division”
University of Chicago Cancer Research Foundation Women’s Board, Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program · active
“and the University of Chicago Cancer Research Foundation Women’s Board”
Runs genome-wide SNP arrays, methylation assays, targeted sequencing, qPCR, MiSeq, HiSeq and Luminex assays on human biospecimens. Supports large-scale population health studies and precision medicine.
43 papers since 2024
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Genetic drivers of heterogeneity in type 2 diabetes pathophysiology
Nature, 2024
DNA methylation correlates of chronological age in diverse human tissue types
Epigenetics & Chromatin, 2024
The association of cigarette smoking with DNA methylation and gene expression in human tissue samples
Studies single-cell RNA-seq and chromatin-accessibility QTL data using computational biology and statistical genetics. Focuses on gene regulation, RNA splicing and splice-switching drugs in human disease.
137 papers since 2024
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A DNA tetrahedron-based ferroptosis-suppressing nanoparticle: superior delivery of curcumin and alleviation of diabetic osteoporosis
Bone Research, 2024
Advanced glycation end products and reactive oxygen species: uncovering the potential role of ferroptosis in diabetic complications
Molecular Medicine, 2024
Global, regional, and national epidemiology of childhood neuroblastoma (1990–2021): a statistical analysis of incidence, mortality, and DALYs
Studies gene regulation using zebrafish transgenic reporter assays, mouse hearts, RNA-Seq and ChIP-Seq. Targets enhancers and regulatory variation in heart development, asthma and diabetes.
15 papers since 2024
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Effect of ultra-processed food consumption on male reproductive and metabolic health
Cell Metabolism, 2025
Paternal dietary macronutrient balance and energy intake drive metabolic and behavioral differences among offspring
Nature Communications, 2024
Dietary macronutrient composition impacts gene regulation in adipose tissue
Develops computational tools for large-scale genomic, haplotype, and low-coverage ancient human DNA data. Studies human genetic variation, heritable disease traits, and evolutionary processes.
17 papers since 2024
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Reduced cyclin D3 expression in erythroid cells protects against malaria
Nature, 2026
Jointly representing long-range genetic similarity and spatially heterogeneous isolation-by-distance
bioRxiv (Cold Spring Harbor Laboratory), 2025
Study design and the sampling of deleterious rare variants in biobank-scale datasets
Develops scNOMe-seq, scATAC-seq and PacBio-based single-molecule assays, plus organoid and CRISPR systems. Studies gene regulation in IBD, atrial fibrillation and human tissues.
6 papers since 2024
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Cell-type-specific eQTLs underlie the genetic architecture of complex traits
Nature, 2026
Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients
Nature Communications, 2025
Cell-type-resolved chromatin accessibility in the human intestine identifies complex regulatory programs and clarifies genetic associations in Crohn’s disease
“We are looking for several postdoctoral researchers with interest in gene regulation, single-cell and single-molecule genomics, and/or complex diseases.”
Studies human complex traits with population and quantitative genetics using GWAS and genomic datasets. Focuses on evolution, genetic architecture, mutation load and speciation.
14 papers since 2024
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Specificity, length and luck drive gene rankings in association studies
Nature, 2025
Simple scaling laws control the genetic architectures of human complex traits
PLoS Biology, 2025
Characterizing selection on complex traits through conditional frequency spectra
Studies cortical neurogenesis and RNA isoforms using single-cell and spatial transcriptomic data, iPSC-derived organoids and neurons. Targets mechanisms and therapies for neurodevelopmental disorders.
11 papers since 2024
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Single-Cell RNA Sequencing Reveals the Spatial Heterogeneity and Functional Alteration of Endothelial Cells in Chronic Hepatitis B Infection
International Journal of Molecular Sciences, 2024
Naked-Eye LAMP Assay of M. tuberculosis in Sputum by In Situ Au Nanoprobe Identification: For the In Vitro Diagnostics of Tuberculosis
ACS Infectious Diseases, 2024
Splice-switching antisense oligonucleotides for pediatric neurological disorders