ASHG 2026 · Tier 1 Academic

University of Chicago at ASHG 2026

Chicago, Illinois

University of Chicago at ASHG 2026 in Montréal: 35 presentations (26 posters, 7 platform talks, 2 featured symposia); 16 research groups.

35
presentations on the program
16
research groups identified
2
sessions invited to or moderated
6
Reviewers’ Choice abstracts

Explore everyone at ASHG 2026 →

OrganizationASHG 2026 Attendance
University of Chicago
Chicago, Illinois
18 PhD Students · 4 PIs · 4 Postdocs · 1 Faculty
Gilad Labgiladlab.uchicago.edu/labmembers
Wet + dry lab~18 people
Studies gene-regulatory evolution using bulk and single-cell RNA sequencing, ATAC-seq and comparative iPSC panels. Connects genetic variation to phenotypes in humans and primates.
10 papers since 2024
Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids
Genome Research, 2025
Genetic regulatory effects in response to a high-cholesterol, high-fat diet in baboons
Cell Genomics, 2024
Cell type and dynamic state govern genetic regulation of gene expression in heterogeneous differentiating cultures
Cell Genomics, 2024
Source: OpenAlex author A5014642082
Funded by NIH, NIH +1 more
NIH, F30 predoctoral fellowship · 5/30/2025
“Geena Woo was recently awarded a prestigious NIH predoctoral fellowship.”
NIH, F31 Ruth L. Kirschstein National Research Service Award · 8/2023
“Erik was granted the NIH F31 Ruth L. Kirschstein National Research Service Award.”
American Heart Association, Predoctoral Fellowship · 5/2023
“He was offered the American Heart Association Predoctoral Fellowship (declined).”
Source: lab pages
9 platforms and techniques
Runs
bulk RNA sequencing, single-cell RNA sequencing (scRNA-seq), ATAC-seq
Techniques
regulatory QTL mapping, mediation analysis, comparative iPSC models, directed stem cell differentiation, guided differentiation, cardiac organoids
Source: lab pages
Currently hiring
“The Gilad Lab continually seeks applications from prospective postdoctoral researchers.”
Source: lab positions page
Poster
Wed Oct 21
2:30 pm
Evidence for regulatory gene expression variability in human cell types
Molecular Effects of Genetic Variation
Gene regulationRegulation of transcriptionGenomics
Poster
Wed Oct 21
2:30 pm
A dispersion-based framework for evaluating clustering resolution in single-cell RNA-seq data
Omics Technologies
Single-cellRNA-seqBioinformaticsImmune system
Poster
Wed Oct 21
2:30 pm
A single-cell resource for characterizing gene expression responses to drug toxicity across cell types and individuals
Artificial Intelligence and Machine Learning
Single-cellDeep learningPharmacogenomicsGene regulation
Poster
Wed Oct 21
2:30 pm
★ Reviewers’ Choice
Functional characterization of divergent cis-regulatory elements in humans and chimpanzees at single-nucleotide resolution
Molecular Effects of Genetic Variation
Evolutionary geneticsGene regulationGenetic variationMulti-omics
Talk
Thu Oct 22
11:30 am
Cis and trans contributions to cell type-specific regulatory evolution in primates
Gene Regulatory Networks Across Development, Evolution, and Disease
EpigeneticsSingle-cellMulti-omicsGene regulation
Poster
Thu Oct 22
4:15 pm
★ Reviewers’ Choice
Comparative analysis of human and chimpanzee liver cell responses to innate immune stimulation
Molecular Effects of Genetic Variation
DifferentiationEvolutionGene regulationImmune system
Poster
Fri Oct 23
2:30 pm
★ Reviewers’ Choice
Characterizing regulatory mechanisms underlying divergence in gene expression fidelity between humans and chimpanzees
Evolutionary and Population Genetics
Gene regulationMulti-omicsQuantitative traitGenomics
LIU LAB @ UChicagoliulab.uchicago.edu
Dry lab~8 people
Combines statistical methods with RNA-seq, ChIP-seq, ATAC-seq, CUT&TAG, scRNAseq and scATACseq data. Studies trans gene regulation and disease biology.
17 papers since 2024
Trans-eQTL mapping in gene sets identifies network effects of genetic variants
Cell Genomics, 2024
Allele frequency impacts the cross-ancestry portability of gene expression prediction in lymphoblastoid cell lines
The American Journal of Human Genetics, 2024
Impact of disease-associated chromatin accessibility QTLs across immune cell types and contexts
medRxiv, 2024
Source: OpenAlex author A5075969050
Funded by NIGMS
NIGMS, Maximizing Investigators’ Research Award (MIRA) (R35) · 2020
“Our lab received the NIGMS Maximizing Investigators’ Research Award (MIRA) (R35) to expand our research”
Source: lab pages
10 platforms and techniques
Analyzes
RNA-seq, ChIP-seq, ATAC-seq, CUT&TAG, scRNAseq, scATACseq
Techniques
CRISPR perturbations, trans-eQTL mapping, polygenic risk scores, GWAS
Source: lab pages
Currently hiring
“We are recruiting!”
Source: lab positions page
Poster
Wed Oct 21
2:30 pm
The integration of trans-regulation and rare variant associations reveal novel pathology of Alzheimer’s disease
Complex Traits and Polygenic Disorders
Collaborators: Columbia University
Alzheimer’s diseaseIdentification of disease genesStatistical geneticsRare variants
Poster
Wed Oct 21
2:30 pm
★ Reviewers’ Choice
Linking Common and Rare Variant Associations Identifies Disease-Mediating Genes in Crohn’s Disease
Complex Traits and Polygenic Disorders
Collaborators: Broad Institute
Complex diseasesAutoimmune disorderRare variantsGenetic variation
Poster
Thu Oct 22
4:15 pm
The perturbome informs the genetic architecture of complex human traits and drug target identification
Statistical Genetics and Genetic Epidemiology
BioinformaticsGene regulationRare variantsStatistical genetics
Talk
Sat Oct 24
8:15 am
OPERA: A Scalable Framework for Identifying Disease-Mediating Gene Programs from Perturb-seq Data
Rethinking Genomic Discovery: New Methods for a Complex Genetic Landscape
Statistical geneticsIdentification of disease genesGenome-wide association studyGenome editing/CRISPR
Pierce Labvoices.uchicago.edu/piercelab
Dry lab~8 people
Studies DNA methylation, sequencing and array measurements in GTEx tissues and arsenic-exposed Bangladeshi cohorts. Targets cancer susceptibility, arsenic toxicity, aging and prostate cancer disparities.
113 papers since 2024
Genome-wide association study of prostate-specific antigen levels in 392,522 men identifies new loci and improves prediction across ancestry groups
Nature Genetics, 2025
DNA methylation correlates of chronological age in diverse human tissue types
Epigenetics & Chromatin, 2024
The association of cigarette smoking with DNA methylation and gene expression in human tissue samples
The American Journal of Human Genetics, 2024
Source: OpenAlex author A5065566745
6 platforms and techniques
Techniques
DNA methylation QTL mapping, Mendelian randomization, Gene-environment interaction analysis, Sequencing-based fine-mapping, Telomere length measurement, DNA methylation clock algorithms
Source: lab pages
Currently hiring
“Our group has openings for doctoral students and postdoctoral scholars/fellows”
Source: lab positions page
No funding stated
Poster
Thu Oct 22
4:15 pm
Cigarette smoking shapes the adaptive immune transcriptome and B cell repertoire across human tissue types
Cancer
Collaborators: University of Pittsburgh
Alternative splicingCancerImmune systemTranscriptome
Poster
Thu Oct 22
4:15 pm
Extracting DNA methylation from long-read sequencing data at population scale: a validated framework applied to the All of Us cohort
Omics Technologies
Collaborators: University of Chicago Medicine Comprehensive Cancer Center
EpigeneticsEpigenome-wide association studiesLong-read sequencingMethylation
Poster
Thu Oct 22
4:15 pm
Multi-ancestry fine-mapping of the TERT/CLPTM1L locus and its pleiotropic effects on telomere length, blood cells, clonal hematopoiesis, and epigenetic aging.
Molecular Effects of Genetic Variation
Collaborators: University of Chicago Medicine Comprehensive Cancer Center, University of Washington +2 more
CancerGenetic mappingGenetic variationGenome-wide association study
Ober Labober.bsd.uchicago.edu/people.php
Wet + dry lab~14 people
Studies asthma genetics using whole-genome/exome sequencing, SNP genotypes, DNA methylation, transcriptomic profiling and cell culture. Uses Hutterite, Amish and birth-cohort data to study disease risk.
58 papers since 2024
Neighborhood Food Access in Early Life and Trajectories of Child Body Mass Index and Obesity
Archives of Pediatrics and Adolescent Medicine, 2024
Analytical challenges in omics research on asthma and allergy: A National Institute of Allergy and Infectious Diseases workshop
Journal of Allergy and Clinical Immunology, 2024
Rhinovirus infection of airway epithelial cells uncovers the non-ciliated subset as a likely driver of genetic risk to childhood-onset asthma
Cell Genomics, 2024
Source: OpenAlex author A5016707790
Funded by NIAID
NIAID, Asthma and Allergy Center at UChicago · active
“continue today as part of the NIAID-funded Asthma and Allergy Center at the UChicago”
Source: lab pages
14 platforms and techniques
Analyzes
whole-genome sequencing, whole-exome sequencing, genome-wide SNP genotypes, DNA methylation, transcriptomic profiling, mRNA and miRNA
Techniques
cell culture models, tissue culture, functional genomics, genome-wide association studies, genotype imputation, haplotype phasing, rhinovirus infection models, airway epithelial and smooth-muscle cell models
Source: lab pages
No openings posted
Poster
Wed Oct 21
2:30 pm
Context-specific eQTLs in upper airway immune cells during viral colds at the 17q12-21 childhood asthma locus
Complex Traits and Polygenic Disorders
Collaborators: Vanderbilt University Medical Center, National Institute of Allergy and Infectious Diseases +13 more
AsthmaExpression quantitative trait lociGene environment interactionGene regulation
Poster
Fri Oct 23
2:30 pm
Unmasking disease pathways: Cell type specific epigenome-wide association studies (EWAS) and expression quantitative trait methylation (eQTM) analyses reveal DNA methylation linked to asthma
Epigenomics
Collaborators: Vanderbilt University Medical Center, Henry Ford Health + Michigan State University Health Sciences +9 more
AsthmaEpigeneticsMethylationRNA-seq
Dahl Labsites.google.com/view/andywdahl/people
Dry lab~6 people
Develops statistical genetics methods for single-cell RNA sequencing and biobank-based genetic studies. Targets complex-disease heterogeneity and patient subtypes with distinct causal biology.
17 papers since 2024
Characterizing the genetic architecture of drug response using gene-context interaction methods
Cell Genomics, 2024
Genetic liability estimated from large-scale family data improves genetic prediction, risk score profiling, and gene mapping for major depression
The American Journal of Human Genetics, 2024
Allele frequency impacts the cross-ancestry portability of gene expression prediction in lymphoblastoid cell lines
The American Journal of Human Genetics, 2024
Source: OpenAlex author A5110946393
7 platforms and techniques
Analyzes
single-cell RNA sequencing
Techniques
gene-environment interaction, epistasis, clustering algorithms, statistical interaction tests, polygenic prediction, cell-type inference
Source: lab pages
Currently hiring
“We are seeking students and postdocs to join our statistical genetics research group.”
Source: lab positions page
No funding stated
Moderator
Fri Oct 23
1:30 pm
Poster
Fri Oct 23
2:30 pm
★ Reviewers’ Choice
Choice of phenotype scale is critical in biobank-based G×E tests
Statistical Genetics and Genetic Epidemiology
Collaborators: University of Pennsylvania
Genome-wide association studyLarge-scale biobanksPolygenic risk score
Barreiro Labluis-barreirolab.org
Wet + dry lab~16 people
Combines RNA-seq and single-cell technologies with PBMC biobank, immunological assays and population genetics. Studies immune variation, infection responses and disease susceptibility across populations and primates.
34 papers since 2024
β-Glucan reprograms neutrophils to promote disease tolerance against influenza A virus
Nature Immunology, 2025
Microbial transmission in the social microbiome and host health and disease
Cell, 2024
BCG vaccination alters the epigenetic landscape of progenitor cells in human bone marrow to influence innate immune responses
Immunity, 2024
Source: OpenAlex author A5088435548
Funded by Chan Zuckerberg Initiative
Chan Zuckerberg Initiative · active
Philanthropic science funding from the Chan Zuckerberg Initiative.
“Our lab started a collaborative network with several PIs from South America, which was recently funded by the Chan Zuckerberg Initiative.”
Source: lab pages
6 platforms and techniques
Runs
RNA-seq
Techniques
Cell culture and immunological assays, Experimental evolution, iPSC-derived macrophages, In-vitro immunological assays, Quantitative trait loci mapping
Source: lab pages
Currently hiring
“We have two openings at the moment.”
Source: lab positions page
Symposium
Fri Oct 23
8:50 am
The genomic architecture of immune variation across populations
Host-Pathogen Coevolution: Shaping Genetic Diversity and Disease Resistance
Center for Personalized Therapeuticscpt.uchicago.edu/people-2-2
Wet lab~18 people
Evaluates pharmacogenomic markers and genetic data in clinical trials. Supports personalized chemotherapy, medication decisions and patient care.
Funded by National Institutes of Health (NIH), University of Chicago Biological Sciences Division +1 more
National Institutes of Health (NIH), Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program · active
“The Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program is sponsored by the National Institutes of Health (NIH)”
University of Chicago Biological Sciences Division, Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program · active
“The Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program is sponsored by the National Institutes of Health (NIH), University of Chicago Biological Sciences Division”
University of Chicago Cancer Research Foundation Women’s Board, Clinical Pharmacology and Pharmacogenomics (CCPP) Training Program · active
“and the University of Chicago Cancer Research Foundation Women’s Board”
Source: lab pages
5 platforms and techniques
Analyzes
Genomic Prescribing System (GPS)
Techniques
Pharmacogenomic testing, Genotyping, Clinical trials, Clinical decision support
Source: lab pages
Currently hiring
“Join The Center of Personalized Therapeutics by applying to The University of Chicago’s Academic Jobs portal.”
Source: lab positions page
Poster
Thu Oct 22
4:15 pm
Cisplatin-induced gene expression patterns reveal resistance and sensitivity insights across cancer types
Pharmacogenomics
Collaborators: University of Notre Dame
CancerPharmacogenomicsTranslational studies and preclinical trialsTranscriptome
Im Labhakyimlab.org
Dry lab~7 people
Develops computational methods for RNA-seq, methylomic, proteomic and MRI data. Applies PrediXcan to UK Biobank, All of Us, TOPMed and MESA studies.
50 papers since 2024
The Farm Animal Genotype–Tissue Expression (FarmGTEx) Project
Nature Genetics, 2025
A multi-tissue, splicing-based joint transcriptome-wide association study identifies susceptibility genes for breast cancer
The American Journal of Human Genetics, 2024
Transcriptome-wide association study of the plasma proteome reveals cis and trans regulatory mechanisms underlying complex traits
The American Journal of Human Genetics, 2024
Source: OpenAlex author A5051721434
Funded by NIH
NIH, Cloud Credit · 2017
“We are delighted to be awarded NIH Cloud Credit that will help us fund our cloud-based web applications and databases”
Source: lab pages
12 platforms and techniques
Analyzes
RNA-seq, Methylomic data, Proteomic data, MRI, 1000G genotypes
Techniques
PrediXcan, S-PrediXcan, MultiXcan, Fine-mapping, Machine learning, OmicKriging, TWAS
Source: lab pages
No openings posted
Poster
Fri Oct 23
2:30 pm
Shared and distinct transcriptional signatures of drug response across human cell types
Pharmacogenomics
PharmacogenomicsBioinformaticsMachine learningPrecision medicine
Institute for Population & Precision Healthipphlab.uchicago.edu/capabilities
Wet lab~5 people
Runs genome-wide SNP arrays, methylation assays, targeted sequencing, qPCR, MiSeq, HiSeq and Luminex assays on human biospecimens. Supports large-scale population health studies and precision medicine.
43 papers since 2024
Genetic drivers of heterogeneity in type 2 diabetes pathophysiology
Nature, 2024
DNA methylation correlates of chronological age in diverse human tissue types
Epigenetics & Chromatin, 2024
The association of cigarette smoking with DNA methylation and gene expression in human tissue samples
The American Journal of Human Genetics, 2024
Source: OpenAlex author A5081425275
Funded by NIH
NIH, Grants
“It has been used in multiple NIH grants and publications.”
Source: lab pages
14 platforms and techniques
Runs
Genome-wide SNP genotyping arrays, Genome-wide methylation assays, Targeted DNA sequencing, qPCR, MiSeq, HiSeq, Luminex 200
Techniques
PBMC and granulocyte separation, DNA and RNA extraction, Whole-exome and whole-genome sequencing, Bisulfite sequencing, Multiplex biomarker assays, Relative telomere length assay, Biobanking
Source: lab pages
No openings posted
Poster
Fri Oct 23
2:30 pm
★ Reviewers’ Choice
Somatic mutation profile in unaffected colon tissue in Colorectal Carcinoma patients: Functional effect on Differential Gene expression and potential use in Precision Medicine.
Cancer
Collaborators: University of Chicago Research Bangladesh, College Station Medical Center
GenomicsPrecision medicineSomatic variantsTranscriptome
Li Labthelilab.com
Wet + dry lab~9 people
Studies single-cell RNA-seq and chromatin-accessibility QTL data using computational biology and statistical genetics. Focuses on gene regulation, RNA splicing and splice-switching drugs in human disease.
137 papers since 2024
A DNA tetrahedron-based ferroptosis-suppressing nanoparticle: superior delivery of curcumin and alleviation of diabetic osteoporosis
Bone Research, 2024
Advanced glycation end products and reactive oxygen species: uncovering the potential role of ferroptosis in diabetic complications
Molecular Medicine, 2024
Global, regional, and national epidemiology of childhood neuroblastoma (1990–2021): a statistical analysis of incidence, mortality, and DALYs
EClinicalMedicine, 2024
Source: OpenAlex author A5029768249
10 platforms and techniques
Analyzes
single-cell RNA-seq, chromatin accessibility QTLs, multi-omics QTL colocalization
Techniques
computational biology, statistical genetics, experimental genomics, RNA splicing quantification, RNA splicing prediction, unproductive splicing analysis, alternative polyadenylation
Source: lab pages
Currently hiring
“We are seeking postdocs with a strong background in computational biology, statistical genetics, or related fields.”
Source: lab positions page
No funding stated
Talk
Thu Oct 22
9:00 am
Big models cheat, small models learn: Interpretable splice-site prediction with Angler
Sequence Models Transforming Genetics and Genomics
Artificial intelligenceDeep learningMachine learningRNA
Luca Lablucalab.org/people
Dry lab~11 people
Studies gene-environment interactions using gene expression, chromatin accessibility, scATAC-seq and RNA-seq data. Applies functional and evolutionary genomics to complex biomedical traits.
24 papers since 2024
Functional characterization of eQTLs and asthma risk loci with scATAC-seq across immune cell types and contexts
The American Journal of Human Genetics, 2025
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits
Genome biology, 2025
Genotype × environment interactions in gene regulation and complex traits
Nature Genetics, 2024
Source: OpenAlex author A5045777431
14 platforms and techniques
Analyzes
scATAC-seq, RNA-seq, DNase-seq, Massively parallel reporter assays, Single-nucleus transcriptomics, Allele-specific expression
Techniques
Gene-environment interaction analysis, Functional genomics, Evolutionary genomics, eQTL analysis, DNase I footprinting, Host-microbiome interactions, Colocalization analysis, Neural-network modeling
Source: lab pages
No funding stated · No openings posted
Symposium
Fri Oct 23
9:00 am
Gene-environment in gene regulation mediates phenotypic plasticity over changing environments
Emergence of Complex Traits at the Intersection of Genomics, Exposomic, and Time
Nobrega Labnobregalab.uchicago.edu
Wet + dry lab~6 people
Studies gene regulation using zebrafish transgenic reporter assays, mouse hearts, RNA-Seq and ChIP-Seq. Targets enhancers and regulatory variation in heart development, asthma and diabetes.
15 papers since 2024
Effect of ultra-processed food consumption on male reproductive and metabolic health
Cell Metabolism, 2025
Paternal dietary macronutrient balance and energy intake drive metabolic and behavioral differences among offspring
Nature Communications, 2024
Dietary macronutrient composition impacts gene regulation in adipose tissue
Communications Biology, 2024
Source: OpenAlex author A5085696863
11 platforms and techniques
Runs
BAC-based enhancer trapping, zebrafish transgenic reporter assays, RNA-Seq, ChIP-Seq, mouse transgenic reporter assays, ATAC-seq
Techniques
CRISPR/Cas9, comparative genomics, protein-DNA binding localization, mouse models, gene regulatory networks
Source: lab pages
No funding stated · No openings posted
Talk
Fri Oct 23
2:15 pm
Integrating computational genetics and functional genomics reveals palmitoylation as a therapeutically targetable pathway in asthma
Multi-Omics Perspectives on Immune Regulation, Adaptation, and Inflammatory Disease
Collaborators: First Affiliated Hospital of Kunming Medical University, Cornell University +1 more
AsthmaExpression quantitative trait lociGenome editing/CRISPRStatistical genetics
Novembre Labjnpopgen.org/team
Dry lab~6 people
Develops computational tools for large-scale genomic, haplotype, and low-coverage ancient human DNA data. Studies human genetic variation, heritable disease traits, and evolutionary processes.
17 papers since 2024
Reduced cyclin D3 expression in erythroid cells protects against malaria
Nature, 2026
Jointly representing long-range genetic similarity and spatially heterogeneous isolation-by-distance
bioRxiv (Cold Spring Harbor Laboratory), 2025
Study design and the sampling of deleterious rare variants in biobank-scale datasets
bioRxiv (Cold Spring Harbor Laboratory), 2024
Source: OpenAlex author A5073718055
Funded by NIH
NIH, Extending Tools for Visualization of Geographic Structure in Population Genomic Data · 4/19
“Our NIH grant proposal on ‘Extending Tools for Visualization of Geographic Structure in Population Genomic Data’ has been awarded.”
Source: lab pages
6 platforms and techniques
Techniques
Population structure inference, Haplotype-based population-genetic inference, GWAS population-structure correction, Ancestry inference, EEMS, Runs-of-homozygosity analysis
Source: lab pages
No openings posted
Talk
Wed Oct 21
11:45 am
Understanding genetic and environmental complexity in phenotypic resemblance across relatedness in population-scale data
Mapping Genetic Relatedness at Biobank Scale: Uncovering Hidden Signal from Rare Variants to Parent-of-Origin Effects
Complex traitsHeritabilityLarge-scale biobanks
Pott Labpott-lab.uchicago.edu/people-2
Wet + dry lab~8 people
Develops scNOMe-seq, scATAC-seq and PacBio-based single-molecule assays, plus organoid and CRISPR systems. Studies gene regulation in IBD, atrial fibrillation and human tissues.
6 papers since 2024
Cell-type-specific eQTLs underlie the genetic architecture of complex traits
Nature, 2026
Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients
Nature Communications, 2025
Cell-type-resolved chromatin accessibility in the human intestine identifies complex regulatory programs and clarifies genetic associations in Crohn’s disease
medRxiv, 2024
Source: OpenAlex author A5008444160
Funded by NIGMS, NHGRI +3 more
NIGMS, R35/MIRA · active
“This work is supported by an R35/MIRA from NIGMS”
NHGRI, R21 · active
“and an R21 from NHGRI”
Helmsley Trust, Gut Cell Atlas grant · active
“This work on this project is supported by a Gut Cell Atlas grant from the Helmsley Trust”
+2 more on the lab page
Source: lab pages
9 platforms and techniques
Works with
scNOMe-seq, scATAC-seq, PacBio, Drop-seq/DroNc-seq, 10x v2/3 chemistry
Techniques
Organoid-based cell culture, CRISPR-based perturbation experiments, Long-read sequencing, Single-molecule epigenetic assays
Source: lab pages
Currently hiring
“We are looking for several postdoctoral researchers with interest in gene regulation, single-cell and single-molecule genomics, and/or complex diseases.”
Source: lab positions page
Talk
Thu Oct 22
9:30 am
Dissecting genetic effects on gene regulatory mechanisms with single-molecule footprinting
New Adventures in Molecular Trait Mapping
ChromatinLong-read sequencingStatistical geneticsGene regulation
SIMONS Labyuvalsimons.org
Dry lab~3 people
Studies human complex traits with population and quantitative genetics using GWAS and genomic datasets. Focuses on evolution, genetic architecture, mutation load and speciation.
14 papers since 2024
Specificity, length and luck drive gene rankings in association studies
Nature, 2025
Simple scaling laws control the genetic architectures of human complex traits
PLoS Biology, 2025
Characterizing selection on complex traits through conditional frequency spectra
Genetics, 2024
Source: OpenAlex author A5007114247
6 platforms and techniques
Techniques
population genetics, quantitative genetics, statistical inference, order statistics, GWAS interpretation, ancestral haplotype reconstruction
Source: lab pages
No funding stated · No openings posted
Poster
Thu Oct 22
4:15 pm
The great human mutagenesis experiment
Evolutionary and Population Genetics
Identification of disease genesPopulation geneticsStatistical geneticsRare variants
Zhang Labzhanglaboratory.org/team
Wet + dry lab~11 people
Studies cortical neurogenesis and RNA isoforms using single-cell and spatial transcriptomic data, iPSC-derived organoids and neurons. Targets mechanisms and therapies for neurodevelopmental disorders.
11 papers since 2024
Single-Cell RNA Sequencing Reveals the Spatial Heterogeneity and Functional Alteration of Endothelial Cells in Chronic Hepatitis B Infection
International Journal of Molecular Sciences, 2024
Naked-Eye LAMP Assay of M. tuberculosis in Sputum by In Situ Au Nanoprobe Identification: For the In Vitro Diagnostics of Tuberculosis
ACS Infectious Diseases, 2024
Splice-switching antisense oligonucleotides for pediatric neurological disorders
Frontiers in Molecular Neuroscience, 2024
Source: OpenAlex author A5039643118
Funded by Simons Foundation Autism Research Initiative, NIGMS +2 more
Simons Foundation Autism Research Initiative · 2025
“The Zhang lab received continued support from the Simons Foundation Autism Research Initiative.”
NIGMS, MIRA award · 2024
“Our group is awarded a MIRA award to investigate protein-RNA interaction and alternative splicing. Thank you NIGMS for the continued support!”
NIMH, R01 · 2023
The NIH's standard multi-year research project grant.
“Our Lab is awarded its first R01. Thanks to NIMH for supporting our research!”
+1 more on the lab page
Source: lab pages
9 platforms and techniques
Works with
single-cell RNA sequencing, single-cell long-read sequencing, spatial transcriptomics, PIE-seq
Techniques
iPSC-derived cerebral organoids, iPSC-derived neurons, splice-switching antisense oligonucleotides, RNA deaminase-based recording, genetic approaches
Source: lab pages
Currently hiring
“We are hiring - please drop us an email if you're interested in investigating brain development and disorders.”
Source: lab positions page
Talk
Sat Oct 24
8:30 am
Transcriptome-wide Mendelian randomization reveals widespread antagonistic pleiotropy between reproductive fitness and complex diseases
The Selection Paradox: Why Disease Variants Persist
Evolutionary geneticsMendelian randomizationComplex traits
7 more presenters — research group not yet identified

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