Age-dependent genes in adipose stem and precursor cells affect regulation of fat cell differentiation and link aging to obesity via cellular and genetic interactions
Develops statistical methods for UCLA Hospital electronic medical records, UK Biobank genotypes and ancient DNA sequences. Studies population history, complex traits and clinical outcomes.
40 papers since 2024
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Estimation and mapping of the missing heritability of human phenotypes
Nature, 2025
Personalized mood prediction from patterns of behavior collected with smartphones
npj Digital Medicine, 2024
A scalable and robust variance components method reveals insights into the architecture of gene-environment interactions underlying complex traits
Studies rare chromatin-modifier disease with RNA-seq, ChIP-seq, methylation-seq, CLIP-seq, Hi-C and patient-specific iPSC models. Uses CRISPR-Cas9 and GWAS data to connect mutations with human disease.
16 papers since 2024
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Th2 skewing in patients with disseminated coccidioidomycosis
JCI Insight, 2026
Investigating the sources of variable impact of pathogenic variants in monogenic metabolic conditions
Nature Communications, 2025
Electronic health record signatures identify undiagnosed patients with common variable immunodeficiency disease
Uses whole-genome and whole-exome sequencing, genotyping, transcriptomics and epigenetic profiling. Studies autism, FTD and PSP with UCSF Memory and Aging Center and PsychENCODE.
115 papers since 2024
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Single-cell genomics and regulatory networks for 388 human brains
Science, 2024
Single-cell multi-cohort dissection of the schizophrenia transcriptome
Science, 2024
Molecular cascades and cell type–specific signatures in ASD revealed by single-cell genomics
Runs DNA extraction, library prep and sequencing of yeasts, worms and plasmids; performs computational analyses. Studies the genetic basis of heritable traits and phenotypic variation.
20 papers since 2024
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Regeneration leads to global tissue rejuvenation in aging sexual planarians
Nature Aging, 2025
Single-cell eQTL mapping in yeast reveals a tradeoff between growth and reproduction
eLife, 2025
Accurate Prediction of Children’s Target Height from Their Mid-Parental Height
Develops statistical methods for GWAS, SNP arrays, WES, WGS and EHR data. Studies psychiatric disorders with UK Biobank and the Psychiatric Genomics Consortium.
83 papers since 2024
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Genomics yields biological and phenotypic insights into bipolar disorder
Nature, 2025
Author Correction: A genomic mutational constraint map using variation in 76,156 human genomes
Nature, 2024
Pan-UK Biobank GWAS improves discovery, analysis of genetic architecture, and resolution into ancestry-enriched effects
Develops statistical models for deep mutational scanning, CRISPR screens, Cell Villages and Perturb-seq. Uses human genetics to study gene function, pharmacogenomics and gene-environment interactions.
21 papers since 2024
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kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq
Nature Protocols, 2024
Rosace: a robust deep mutational scanning analysis framework employing position and mean-variance shrinkage
Genome biology, 2024
Mapping kinase domain resistance mechanisms for the MET receptor tyrosine kinase via deep mutational scanning
Analyzes single-sample bulk whole-genome and long-read sequencing data with computational genomics. Studies cancer development, precision medicine and hereditary cancer screening.
38 papers since 2024
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HER2 heterogeneity and treatment response–associated profiles in HER2-positive breast cancer in the NCT02326974 clinical trial
Journal of Clinical Investigation, 2024
Analytical validation of HER2DX genomic test for early-stage HER2-positive breast cancer
ESMO Open, 2024
The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
“Current funded research focuses on systematic analysis of genetic and gene regulation information in clinical cohorts as part of the Genome Data Analysis Network”
Uses high-throughput genotyping, DNA sequencing, gene-expression analysis and epigenetic screening to study neuropsychiatric and neurological disorders. Works across human and model-organism phenotypes.
20 papers since 2024
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Genomics yields biological and phenotypic insights into bipolar disorder
Nature, 2025
Personalized mood prediction from patterns of behavior collected with smartphones
npj Digital Medicine, 2024
Genome-Wide Association Study Meta-Analysis of 9619 Cases With Tic Disorders
DNA sequencing, High-throughput genotyping, Array-based expression, Epigenetic screening, Gene-expression analysis
Techniques
Genetic manipulation of model organisms, Bioinformatics, statistics and cell biology, Behavioral phenotyping, Population genetics and functional genomics, Stem-cell-based organoid and mouse models, Mouse-strain circuit techniques, High-throughput drug screening
Develops statistical models on UK Biobank, population-scale genomic and single-cell transcriptomics data. Uses human genetics, causal inference and AI to dissect disease heterogeneity and nominate targets.
11 papers since 2024
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Single-cell multiregion epigenomic rewiring in Alzheimer’s disease progression and cognitive resilience
Cell, 2025
PRISM: ancestry-aware integration of tissue-specific genomic annotations enhances the transferability of polygenic scores
bioRxiv (Cold Spring Harbor Laboratory), 2025
A polygenic score method boosted by non-additive models
Builds cell villages from human stem cells and analyzes genetic, molecular and cellular phenotypes. Uses them to study brain development, environmental exposures and drug safety.
6 papers since 2024
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Cell villages and Dirichlet modeling map human cell fitness genetics
The American Journal of Human Genetics, 2026
βIV spectrin abundancy, cellular distribution and sensitivity to AKT/GSK3 regulation in schizophrenia
Molecular Psychiatry, 2025
Protocol for neurogenin-2-mediated induction of human stem cell-derived neural progenitor cells
Funded by National Institutes of Health, Simons Foundation +3 more
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National Institutes of Health · active
“We are funded by the National Institutes of Health, Simons Foundation, Burroughs Wellcome Fund, and the California Institute for Regenerative Medicine.”
Simons Foundation · active
“We are funded by the National Institutes of Health, Simons Foundation, Burroughs Wellcome Fund, and the California Institute for Regenerative Medicine.”
Burroughs Wellcome Fund · active
“We are funded by the National Institutes of Health, Simons Foundation, Burroughs Wellcome Fund, and the California Institute for Regenerative Medicine.”
Studies ethical, legal, social, cultural and historical implications of pangenome sequences and cell lines. Advises HPRC and engages stakeholders, rights-holders and Indigenous communities.
20 papers since 2024
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Advancing genomics to improve health equity
Nature Genetics, 2024
Racial Equity, Diversity and Inclusion in Bioethics: Recommendations from the Association of Bioethics Program Directors Presidential Task Force
The American Journal of Bioethics, 2024
Exploring the role of digital tools in rare disease management: An interview‐based study
harmonizing consent documents, CARE Principles for Indigenous Data Governance, community-based research approaches, public, stakeholder and rights-holder engagement
Analyzes population-scale RNA and ATAC sequencing, smartphone and wearable data, and electronic health records. Studies genetic and environmental mechanisms of metabolic and psychiatric phenotypes.
33 papers since 2024
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Comparing self reported and physiological sleep quality from consumer devices to depression and neurocognitive performance
npj Digital Medicine, 2025
Deciphering the impact of genomic variation on function
Nature, 2024
Personalized mood prediction from patterns of behavior collected with smartphones