Develops causal-inference and machine-learning methods for single-cell genomics, multi-omics integration and statistical genetics. Applies them to ENCODE, GTEx, Human Cell Atlas and Tabula Muris/Sapiens.
33 papers since 2024
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Integrative transcriptogenomic analyses reveal the regulatory network underlying rice eating and cooking quality and identify a role for alpha-globulin in modulating starch and sucrose metabolism
Plant Communications, 2025
Understanding the molecular mechanisms of drought tolerance in wild soybean (Glycine soja) through multi-omics-based alternative splicing predictions
Environmental and Experimental Botany, 2024
Harnessing γ-TMT Genetic Variations and Haplotypes for Vitamin E Diversity in the Korean Rice Collection
Hematopoietic systemRNARegulation of transcriptionBioinformatics
Collaboration for Outcomes Research and Evaluation (CORE)core.ubc.ca
Dry lab~14 people
Analyzes population-based health administrative data using epidemiology and health economics. Evaluates policy interventions and health technology value with British Columbia Ministry of Health partners.
31 papers since 2024
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Real-world diagnostic outcomes and cost-effectiveness of genome-wide sequencing for developmental and seizure disorders: Evidence from Canada
Genetics in Medicine, 2024
Health-related quality of life among women and men living with migraine: a Canada-wide cross-sectional study
The Journal of Headache and Pain, 2024
Productivity Loss Associated with Disability from Migraine: A Canada-Wide Cross-Sectional Study
Canadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques, 2024
Studies genetic counselling and health-service delivery around genome-wide sequencing. Work includes NICU/PICU families and Canadian clinical genetics workforce planning.
30 papers since 2024
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The impact of genetic counselor involvement in genetic and genomic test order review: A scoping review
Genetics in Medicine, 2025
Real-world diagnostic outcomes and cost-effectiveness of genome-wide sequencing for developmental and seizure disorders: Evidence from Canada
Genetics in Medicine, 2024
Health Care Costs After Genome-Wide Sequencing for Children With Rare Diseases in England and Canada
Canada's federal health-research funder, the equivalent of the NIH.
“CIHR Knowledge Synthesis Grant”
CIHR, Workforce Transformation Grant · active
Canada's federal health-research funder, the equivalent of the NIH.
“CIHR Workforce Transformation Grant”
Genome Canada, LSARP · active
“current Project Lead for a Genome Canada LSARP grant “GenCOUNSEL – Optimization of Genetic counselling with implementation of genome-wide sequencing””
Develops algorithms for RNA-seq, long-read and short-read sequencing data, genome assembly, ancestry and clinical genomics. Applies them to cancer, rare-disease diagnosis, HostSeq and forest genomics.
43 papers since 2024
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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Nature Methods, 2024
Multi-genome synteny detection using minimizer graph mappings
bioRxiv (Cold Spring Harbor Laboratory), 2024
Structure‐aware deep learning model for peptide toxicity prediction
Collaborators: Canada's Michael Smith Genome Sciences Centre, BC Children's Hospital Research Institute
Population structurePopulation geneticsBioinformaticsGenomics
Canadian Pharmacogenomics Network for Drug Safety (CPNDS)cpnds.ubc.ca
Wet + dry lab~37 people
Studies genetic variation using genomic databases, Illumina Global Screening Array and exome, short- and long-read whole-genome sequencing. Develops tests predicting severe adverse drug reactions.
Funded by Canadian Institutes of Health Research, BC Children’s Hospital Research Institute +5 more
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Canadian Institutes of Health Research · active
““This work is funded by the Canadian Institutes of Health Research (CIHR).””
Genome Canada; Genome BC; CIHR, Large Scale Applied Research Project Competition: Genomics and Precision Medicine · 2018 – 2022
Canada's federal health-research funder, the equivalent of the NIH.
““Genome Canada, Genome BC, CIHR Large Scale Applied Research Project Competition: Genomics and Precision Medicine (2018 – 2022)””
BC Children’s Hospital Research Institute, Evidence to Innovation Theme Seed Grant Award · 2020 – 2021
““BC Children’s Hospital Research Institute Evidence to Innovation Theme Seed Grant Award (2020 – 2021)””
Illumina Global Screening Array, Exome sequencing, Short-read whole-genome sequencing, Long-read whole-genome sequencing, AWS cloud system, UBC High Performance Computing Cluster
Techniques
Whole-genome and exome sequencing pipelines, Genomic association analyses, Pharmacogenomic testing, Active surveillance, Machine learning, Real-world data
Studies genetic and epigenetic architecture using genome-wide association and sequencing studies. Develops risk scores for newborn screening and personalized medicine.
2 papers since 2024
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Genetic characterization of preschool wheeze phenotypes
Journal of Allergy and Clinical Immunology, 2025
Food Allergy Genetics and Epigenetics: A Review of Genome‐Wide Association Studies
Applies computational methods to whole-genome sequencing, genotype microarrays, DNA methylation microarrays and population-health data. Studies brain-related traits and environmental effects across the life course.
13 papers since 2024
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Genome-wide association studies of binge-eating behaviour and anorexia nervosa yield insights into the unique and shared biology of eating disorder phenotypes
medRxiv, 2025
Canadian COVID-19 host genetics cohort replicates known severity associations
PLoS Genetics, 2024
Sex-dependent placental methylation quantitative trait loci provide insight into the prenatal origins of childhood onset traits and conditions
Studies rare human genetic disorders with genome-wide sequencing, DNA methylation and animal-model data. Focuses on obesity, diabetes, familial brain aneurysms and childhood overgrowth.
16 papers since 2024
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Identity development and adaptation in adolescents with genetic conditions: a qualitatively oriented mixed-methods study to develop strategies for optimizing clinical genetics services
Orphanet Journal of Rare Diseases, 2025
Maintenance of thermogenic adipose tissues despite loss of the H3K27 acetyltransferases p300 or CBP
American Journal of Physiology-Endocrinology and Metabolism, 2024
Long-read sequencing for detection and subtyping of Prader-Willi and Angelman syndromes
Funded by CIHR, Heart and Stroke Foundation of Canada +3 more
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CIHR, Project Grant, Functional Studies of Coding Variants in Polycomb Repressive Complex · 2020–2025
Canada's federal health-research funder, the equivalent of the NIH.
“CIHR Project Grant, Functional Studies of Coding Variants in Polycomb Repressive Complex, 2020–2025”
Heart and Stroke Foundation of Canada, Grant-in-Aid; Next-Generation Sequencing for Rare, Highly-Penetrant Mutations in Familial Intracranial Aneurysms · 2017–2020
“Heart and Stroke Foundation of Canada Grant-in-Aid; Next-Generation Sequencing for Rare, Highly-Penetrant Mutations in Familial Intracranial Aneurysms; 2017–2020”
CIHR, Project Grant, Regulation of islet cell proliferation by p300 · 2016–2019
Canada's federal health-research funder, the equivalent of the NIH.
“CIHR Project Grant, Regulation of islet cell proliferation by p300, 2016–2019”
Studies ovarian and rare cancers using organoids, single-cell genomic techniques, proteomics and immunohistochemical markers. Develops subtype-specific prevention, diagnostics and treatments.
260 papers since 2024
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Learning generalizable AI models for multi-center histopathology image classification
npj Precision Oncology, 2024
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers
Nature Communications, 2024
Integrative multi-omics analyses to identify the genetic and functional mechanisms underlying ovarian cancer risk regions
Runs self-amplifying DNA/RNA and lipid nanoparticle vaccine platforms in cell and animal studies. Develops cancer immunotherapies, vaccines and brain-delivery therapies with Vancouver Prostate Centre colleagues.
10 papers since 2024
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Mind over matter: the microbial mindscapes of psychedelics and the gut-brain axis
Pharmacological Research, 2024
Conclusive demonstration of iatrogenic Alzheimer’s disease transmission in a model of stem cell transplantation
Stem Cell Reports, 2024
A novel type-2 innate lymphoid cell-based immunotherapy for cancer
Stem cell-derived Alzheimer’s disease models, Cell-based immunotherapy, Type 2 innate lymphocyte culture and expansion, Gene, protein and small-molecule screening, Cell and animal studies
Analyzes nanopore long-read, Strand-seq and transcriptome data with bioinformatics and computational methods. Uses cancer genomic profiles to identify biomarkers, therapeutic targets and epigenetic compounds.
69 papers since 2024
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Nanopore direct RNA sequencing of human transcriptomes reveals the complexity of mRNA modifications and crosstalk between regulatory features
Cell Genomics, 2025
AI-based histopathology image analysis reveals a distinct subset of endometrial cancers
Nature Communications, 2024
Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes
Studies human genetics, pharmacogenomics and experimental C. elegans models. Develops predictive genetic testing for safer pain medications in children.
17 papers since 2024
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Machine learning model identifies genetic predictors of cisplatin-induced ototoxicity in CERS6 and TLR4
Computers in Biology and Medicine, 2024
Genomic variations associated with risk and protection against vincristine-induced peripheral neuropathy in pediatric cancer patients
npj Genomic Medicine, 2024
The myelin water imaging transcriptome: myelin water fraction regionally varies with oligodendrocyte-specific gene expression
Studies pediatric drug safety and effectiveness using genotyping, pharmacogenomics, pharmacoepidemiology and linked clinical/genomic data. CPNDS develops predictive tests for adverse drug reactions in children.
27 papers since 2024
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Systematic Review and Meta-Analysis: Acetaminophen Use During Pregnancy and the Risk of Neurodevelopmental Disorders in Childhood
Journal of the American Academy of Child & Adolescent Psychiatry, 2025
Vaccination for healthy aging
Science Translational Medicine, 2024
Machine learning model identifies genetic predictors of cisplatin-induced ototoxicity in CERS6 and TLR4
“He is currently working on a Genome Canada funded project with the Canadian Pharmacogenomics Network for Drug Safety (CPNDS), in Vancouver”
CIHR, Drug Safety and Effectiveness Network · active
Canada's federal health-research funder, the equivalent of the NIH.
“She interfaces with the CIHR - Drug Safety and Effectiveness Network to design, develop and implement studies conducted by the pan-Canadian SEARCH & PREVENT team”
CIHR
Canada's federal health-research funder, the equivalent of the NIH.
“Her subsequent CIHR-, MHRC- and Mitacs-funded post-doctoral work was conducted at the University of Manitoba and University of British Columbia.”
Pharmacogenomics, pharmacoepidemiology and pharmacokinetics, Genome-wide association studies, Next-generation sequencing, Longitudinal cohort modeling, Causal inference in epidemiology, Population genetics
Uses next-generation sequencing and whole-genome sequence data to interpret germline variation. Improves hereditary cancer detection through BC Cancer's Hereditary Cancer Program.
54 papers since 2024
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Long-read sequencing of an advanced cancer cohort resolves rearrangements, unravels haplotypes, and reveals methylation landscapes
Cell Genomics, 2024
Consensus Statement: Recommendations on Actionable Biomarker Testing for Thyroid Cancer Management
Endocrine Pathology, 2024
The Pancreatic Cancer Early Detection (PRECEDE) Study is a Global Effort to Drive Early Detection: Baseline Imaging Findings in High-Risk Individuals
Journal of the National Comprehensive Cancer Network, 2024
Funded by Craig’s Cause Pancreatic Cancer Society, TrovaNOW +3 more
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TrovaNOW · 5 years
“Dr. [name] received a TrovaNOW award for the project titled, “Pancreatic cancer early detection consurtium (precede).””
Cancer Research Society, Operating grant · 2 years
“Dr. [name] received a Cancer Research Society Operating grant for the project titled, “Functional characterization of tumour suppressor variants through single cell phenotypic profiling.””
Craig’s Cause Pancreatic Cancer Society, Faculty Research grant · 2 years
“Dr. [name] received a Craig’s Cause Pancreatic Cancer Society Faculty Research grant for the project titled, “Parent-of-origin-aware genomic analysis in pancreatic cancer families.””